Fig. 5

RMSD and RMSF analysis of the MD trajectory A RMSD as a function of the simulation time for p37 UBX domain (green), p97 N-D1 (red) and the complex p37 UBX—p97 N-D1 (purple). B Histograms of the RMSD for p37 UBX domain, p97 N-D1 and the complex p37 UBX—p97 N-D1. C) RMSF over the simulation of each individual residue for p37 UBX domain and p97 N-D1